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Commits on Apr 12, 2022

  1. Find data transformer (#1776) 

    * Stricter search of analyzed data
* Edit data file suffix
    @AlexEMG
    AlexEMG committed Apr 12, 2022
    fa28ac6

  2. Stricter file search based on suffixes (#1774) 

    * Stricter search of analyzed data

* Edit data file suffix

* Clarify logic to find analyzed data
    @jeylau
    jeylau committed Apr 12, 2022
    d340624

  3. Improved behavior of get_list_of_videos (#1773) 

    * We're pythonic

* Edit default videotype and minor fixes

* Minor fix

* Add unit test

* Update auxfun_videos.py

* add more random files in test

* Minor edits

Co-authored-by: Alexander Mathis <alexander@deeplabcut.org>
    @jeylau @AlexEMG
    jeylau and AlexEMG committed Apr 12, 2022
    38647c5

  4. Fix typo

    @jeylau
    jeylau committed Apr 12, 2022
    e15cdad

Commits on Apr 11, 2022

  1. Delay torch import (#1772) 

    * Delay torch import
* Update transformer_reID help function
* Keep high-level API intact
    @jeylau
    jeylau committed Apr 11, 2022
    3f633db

Commits on Apr 10, 2022

  1. adding plotting for transformer demo (#1770) 

    * Update COLAB_transformer_reID.ipynb
    @MMathisLab
    MMathisLab committed Apr 10, 2022
    447fc6a

  2. colab for transformer reID (WIP) (#1768) 

    * Created using Colaboratory
* Update COLAB_3miceDemo.ipynb
    @MMathisLab
    MMathisLab committed Apr 10, 2022
    998e091

  3. docstring

    @AlexEMG
    AlexEMG committed Apr 10, 2022
    d362847

  4. 16

    @AlexEMG
    AlexEMG committed Apr 10, 2022
    ad81f35

  5. Mwm/deployment transformer_reID (#1767)

    @MMathisLab
    MMathisLab committed Apr 10, 2022
    8fc83b6

  6. Handle MultiIndex in convertcsv2h5 (#1769)

    @jeylau
    jeylau committed Apr 10, 2022
    78aa3e1

Commits on Apr 8, 2022

  1. remove unnecessary new recipe page

    @MMathisLab
    MMathisLab committed Apr 8, 2022
    1a1beaa

  2. Improved 3D data processing (#1690) 

     vectorized point undistortion
  seamlessly handle single- and multi-animal data
  handle any # of view pairs (low-level API)
  unit tests
  cross-view association (at the assembly or track level) for maDLC
  accelerate and fix create_labeled_video_3d (see plotting3D.py does not support Multimode #1593)
    @jeylau
    jeylau committed Apr 8, 2022
    13194be

  3. Fix TypeError when refining outliers (#1763) 

    * Avoid re-extracting already extracted frames
    @jeylau
    jeylau committed Apr 8, 2022
    4ee488d

  4. from transID to master (#1) (#1764) 

    Added support for transformer-based ReID
    @yeshaokai
    yeshaokai committed Apr 8, 2022
    4
    2fdfdaf

Commits on Apr 6, 2022

  1. Address an off by one error in the TQDM progress bar in the predict s… 

    …teps. (#1744)
    @hmaarrfk
    hmaarrfk committed Apr 6, 2022
    c43e952

  2. Allow windows to resize to be smaller than the default size (#1613)

    @hmaarrfk
    hmaarrfk committed Apr 6, 2022
    c4ec579

  3. closes #1753 (#1755) 

    adding https vs. git to openfield colab
    @MMathisLab
    MMathisLab committed Apr 6, 2022
    fe52958

  4. Fix NameError: name 'config' is not defined in get_track_method (#1665) 

    * Fix get_track_method and small cleanup
* Write default track method to config when absent
* Update predict_videos.py
Co-authored-by: Alexander Mathis <alexander@deeplabcut.org>
    @jeylau
    jeylau committed Apr 6, 2022
    50ab9cf

  5. Add function for handling too many extracted labels (#1751) 

    * fix bug in dropimagesduetolackofannotation; Add function drop_unlabeled_frames
* standardizing names
* standardizing names with old, concatenated style
Co-authored-by: Alexander Mathis <mathisepfl@gmail.com>
    @frankiechang123
    frankiechang123 committed Apr 6, 2022
    faaa9af

  6. Add option to automatically jump to the next unlabeled data folder (#… 

    …1733)

* Add utility to find the next unlabeled folder
* Add option to labeling/refinement GUIs
* Update auxiliaryfunctions.py
* Do not open the file dialog if jump_unlabeled=True
Co-authored-by: Alexander Mathis <mathisepfl@gmail.com>
    @jeylau
    jeylau committed Apr 6, 2022
    e8f7c3f

Commits on Apr 5, 2022

  1. maDLC 5 min tutorial update

    @MMathisLab
    MMathisLab committed Apr 5, 2022
    7ecb836

Commits on Apr 4, 2022

  1. Delay setting the matplotlib backend until the user asks to launch the ( 

    #1730)

GUI
    @hmaarrfk
    hmaarrfk committed Apr 4, 2022
    b01021d

Commits on Mar 31, 2022

  1. OpenVINO backend (#1686) 

    * OpenVino
    @dkurt
    dkurt committed Mar 31, 2022
    686cf5e

Commits on Mar 30, 2022

  1. Remove duplicate description example (#1746) 

    * Remove duplicate description example

* Typo fix
    @vidalmaxime
    vidalmaxime committed Mar 30, 2022
    d2c5bd4

Commits on Mar 28, 2022

  1. Revert "Merge branch 'refactor_eval' into master" 

    This reverts commit 0e7789e, reversing
changes made to c3457c2.
    @jeylau
    jeylau committed Mar 28, 2022
    35f5a15

  2. Merge branch 'refactor_eval' into master

    @jeylau
    jeylau committed Mar 28, 2022
    0e7789e

  3. Clean up outdated code

    @jeylau
    jeylau committed Mar 28, 2022
    8cf35bc

Commits on Mar 24, 2022

  1. Add test time image resizing (#1737) 

    * Allow one to disable smart cropping
* Add test-time image resizing
* Adjust map sizes when smart cropping is off
    @jeylau
    jeylau committed Mar 24, 2022
    c3457c2

  2. Exit while loop prematurely if not finding valid image sizes (#1738) 

    * Stop prematurely if not finding valid image sizes
* Also indicate when images may be too small
    @jeylau
    jeylau committed Mar 24, 2022
    fd55fdd

Commits on Mar 23, 2022

  1. Fix typo

    @jeylau
    jeylau committed Mar 23, 2022
    e24bf03

Commits on Mar 22, 2022

  1. Added posecfg_template option to create_training_dataset (#1423) 

    * Added posecfg_template option to create_training_dataset
Co-authored-by: Alex Smith <alexander.smith@mssm.edu>
Co-authored-by: Alexander Mathis <alexander@deeplabcut.org>
Co-authored-by: Jessy Lauer <30733203+jeylau@users.noreply.github.com>
    @alexcwsmith
    alexcwsmith committed Mar 22, 2022
    981b1b0

  2. Refactor create_labeled_video (#1731)

    @jeylau
    jeylau committed Mar 22, 2022
    291ffa0

  3. Update python-package.yml -- testing 3.9 (consider dropping 3.7?), an… 

    …d security patch (#1729)

* Update python-package.yml
    @MMathisLab
    MMathisLab committed Mar 22, 2022
    190d5bc

Commits on Mar 21, 2022

  1. Fix assembly visualization with unique keypoints

    @jeylau
    jeylau committed Mar 21, 2022
    9d96d01
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