Structural variant and indel caller for mapped sequencing data

Structural variation caller using third generation sequencing

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Structural variation and indel detection by local assembly

Toolset for SV simulation, comparison and filtering

novoBreak: local assembly for breakpoint detection in cancer genomes

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)

Micro DNA identification

Pipeline for SV detection using 10X genomics data

PhD thesis