Datasnakes

Pinned repositories

1. OrthoEvolution

   An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes.

   Python 22 2

2. beRi

   beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R

   Python 15

3. renv

   Creating virtual environments for R.

   Python 12

4. awesome-reproducible-R

   An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

   8 1

5. rut

   A cli of r utilities aimed at package and .Rprofile management.

   Python 4

6. rinse

   A configurable installer CLI for installing R from source (sudo and non-sudo).

   Python 3

• OrthoEvolution

  An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes.

  python shell bash data-science bioinformatics genetics biology
  Python 2 22 18 0 Updated Jul 19, 2019

• orthoevol-snakemake

  A snakemake workflow for the OrthoEvol python package.

  snakemake orthology-inference snakemake-workflow snakemake-pipelines orthoevol
  Python MIT 0 1 0 0 Updated Jul 16, 2019

• renv

  Creating virtual environments for R.

  python cli r reproducible-research package-management virtual-environment renv
  Python MIT 0 12 13 0 Updated Jun 15, 2019

• archives

  💀 Where everything goes to die. 💀

  archives python3 archived archive
  Python 0 0 0 0 Updated May 16, 2019

• roxygen-tags

  A comprehensive list of roxygen tags and their use cases.

  documentation tags roxygen roxygen2 roxygen-documentation
  Unlicense 0 3 1 0 Updated May 14, 2019

• open-source-ideas

  Submit ideas for projects or packages here.

  python open-source open-science ideas rstats
  0 0 0 0 Updated May 13, 2019

• htseq-count-cluster

  A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

  cli cluster sge rnaseq htseq htseq-count htseq-count-cluster
  Python MIT 0 3 3 (1 issue needs help) 0 Updated May 7, 2019

• awesome-reproducible-R

  An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

  r reproducible-research reproducible-science ropensci r-consortium rtools r-core
  Unlicense 1 8 1 (1 issue needs help) 0 Updated May 3, 2019

• rinse

  A configurable installer CLI for installing R from source (sudo and non-sudo).

  cli r installer r-programming package-management
  Python MIT 0 3 10 0 Updated Apr 12, 2019

• rut

  A cli of r utilities aimed at package and .Rprofile management.

  cli cran r manager projects jetpack package-management
  Python MIT 0 4 9 0 Updated Apr 3, 2019

• beri-isc-proposal

  An isc proposal to the R Consortium to elicit their support for beRi.

  bioinformatics r reproducible-research ropensci r-consortium isc-proposal r-core
  TeX 0 2 2 0 Updated Dec 18, 2018

• python-hands-on-tutorial

  A hands-on Python3 tutorial

  interactive biology python3 python-tutorial
  Python MIT 0 4 1 0 Updated Dec 8, 2018

• cookiecutter-pypackage-travisci

  A cookiecutter template for creating a python project & using travis ci for continuous integration.

  python travis-ci cookiecutter python-package cookiecutter-template
  Python 0 4 0 0 Updated Dec 8, 2018

• shinyconfig

  An R package that aids in the configuration and setup of shiny apps.

  shiny configuration
  R 0 0 0 0 Updated Dec 8, 2018

• semver.org

  Forked from semver/semver.org

  Semantic Versioning spec and website
  CSS 165 0 0 0 Updated Dec 3, 2018

• datasnakes.github.io

  This is the website for the Datasnakes.

  website
  CSS 1 2 2 0 Updated Oct 31, 2018

• beRi

  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R

  cli package-manager environment r python3 package-management hackseq18
  Python MIT 0 15 6 0 Updated Oct 31, 2018

• jetpack

  Forked from ankane/jetpack

  A friendly package manager for R

  r install jetpack manage packrat
  R 10 0 0 0 Updated Oct 14, 2018

• explore

  Forked from github/explore

  Community-curated topic pages on GitHub
  Ruby CC-BY-4.0 4,357 0 1 0 Updated Sep 11, 2018

• up-for-grabs.net

  Forked from up-for-grabs/up-for-grabs.net

  Jump in!
  JavaScript 731 0 0 0 Updated Aug 23, 2018

• r-color-palettes

  Forked from EmilHvitfeldt/r-color-palettes

  Comprehensive list of color palettes available in r
  R 37 0 0 0 Updated Jul 18, 2018

• qsubmitter

  Forked from zachary-foster/qsubmitter

  An R package to submit arbitrary jobs to a remote SGE cluster

  r sge qsub
  R MIT 1 2 0 0 Updated Jun 5, 2018

• cookiecutter-orthoevol

  A cookiecutter template for the OrthoEvol python package

  python data-science bioinformatics cookiecutter cookiecutter-template
  Python 0 2 0 0 Updated May 3, 2018

• biopython

  Forked from biopython/biopython

  Official git repository for Biopython (converted from CVS)
  Python 934 0 0 0 Updated Apr 1, 2018

• halvade

  Forked from biointec/halvade

  Parallel read alignment and variant calling using MapReduce
  Java GPL-3.0 4 0 0 0 Updated Mar 15, 2018

• htseq

  Forked from simon-anders/htseq

  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  C++ GPL-3.0 49 0 0 0 Updated Nov 28, 2017

• biosql

  Forked from biosql/biosql
  Perl LGPL-3.0 23 0 0 0 Updated Oct 26, 2017

• BioSQL-Extensions

  Forked from ctSkennerton/BioSQL-Extensions

  Extra tables and views to be loaded into a BioSQL database for proteomic and genomic applications
  Python MIT 3 0 0 0 Updated Sep 28, 2017

• github-readme-templates

  Easy to use README templates for a python project or python module

  github markdown readme readme-template
  0 2 0 0 Updated Jun 12, 2017

• Datasnakes-Flask-Cookie

  Forked from cookiecutter-flask/cookiecutter-flask

  A flask template with Bootstrap 3, asset bundling+minification, starter templates, and registration/authentication. For use with cookiecutter.
  JavaScript 510 0 0 0 Updated May 11, 2017

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