@@ -14,72 +14,8 @@ At the moment this tutorial is still under development. Please check the [BioJa
1414Book 1: [ The Protein Structure modules] ( structure/README.md )
1515
1616
17- < script type = " text/javascript " src = " JSmol.min.js " ></ script >
17+ ## License
1818
19- < script type = " text/javascript " >
19+ The content of this tutorial is available under the [ CC-BY ] ( http://creativecommons.org/licenses/by/3.0/ ) license.
2020
21- // 1/21/2013 10:54:15 PM -- adds image handling
22-
23- var jmolApplet0; // set up in HTML table, below
24-
25- // logic is set by indicating order of USE -- default is HTML5 for this test page, though
26- var use = " HTML5" // JAVA HTML5 WEBGL IMAGE are all otions
27- var s = document .location .search ;
28-
29-
30- // Developers: The debugCode flag is checked in j2s/core/core.z.js,
31- // and, if TRUE, skips loading the core methods, forcing those
32- // to be read from their individual directories. Set this
33- // true if you want to do some code debugging by inserting
34- // System.out.println, document.title, or alert commands
35- // anywhere in the Java or Jmol code.
36-
37- Jmol .debugCode = (s .indexOf (" debugcode" >= 0 );
38-
39- jmol_isReady = function (applet ) {
40- Jmol ._getElement (applet, " appletdiv" style .border = " 1px solid blue"
41- }
42-
43- var xxxx = document .location .search
44- if (xxxx .length == 5 || xxxx .length == 0 ) {
45- xxxx = (xxxx + " ?1crn" substring (1 ,5 )
46- script = ' h2oOn=true;set animframecallback "jmolscript:if (!selectionHalos) {select model=_modelNumber}";'
47- + ' set errorCallback "myCallback";'
48- + ' set defaultloadscript "isDssp = false;set defaultVDW babel;if(!h2oOn){display !water}";'
49- + ' set zoomlarge false;set echo top left;echo loading XXXX...;refresh;'
50- + ' load "http://www.rcsb.org/pdb/files/XXXX.pdb";set echo top center;echo XXXX;'
51- + ' spacefill off;wireframe off;cartoons on;color structure;'
52- script = script .replace (/ XXXX/ g
53- } else {
54- script = unescape (xxxx .substring (1 ))
55- }
56-
57-
58- var Info = {
59- width: 450 ,
60- height: 450 ,
61- debug: false ,
62- color: " white"
63- addSelectionOptions: false ,
64- serverURL: " http://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php"
65- use: " HTML5"
66- j2sPath: " j2s"
67- readyFunction: jmol_isReady,
68- script: script,
69- // jarPath: "java",
70- // jarFile: (useSignedApplet ? "JmolAppletSigned.jar" : "JmolApplet.jar"),
71- // isSigned: useSignedApplet,
72- // disableJ2SLoadMonitor: true,
73- disableInitialConsole: true
74- // defaultModel: "$dopamine",
75- // console: "none", // default will be jmolApplet0_infodiv
76- }
77-
78- </script >
79-
80-
81- <script type =" text/javascript " >
82-
83- jmolApplet0 = Jmol .getApplet (" jmolApplet0"
84-
85- </script >
21+ [ view license] ( license.md )
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