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Updating to latest RCSB URLs for 4.2.x#683

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josemduarte merged 5 commits intobiojava:bugfixes-4.2from
josemduarte:bugfixes-4.2
Jul 6, 2017
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Updating to latest RCSB URLs for 4.2.x#683
josemduarte merged 5 commits intobiojava:bugfixes-4.2from
josemduarte:bugfixes-4.2

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@josemduarte josemduarte commented Jul 6, 2017

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@lafita
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lafita commented Jul 6, 2017 •
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Some tests are still failing:

Failed tests: 
  ChemCompTest.testChangingProviders:144 expected:<[MEA]> but was:<[???]>
  ChemCompTest.testMEA:72  one letter code is not correct expected:<[F]> but was:<[?]>
  ChemCompTest.testPRR:104 Got back group of wrong type! org.biojava.nbio.structure.HetatomImpl
  TestAsaCalc.testAsa3PIU:69 expected:<17462.0> but was:<17638.907170976614>
  TestParseMmCIFLigands.testLigandConnections:65 expected:<172> but was:<0>
  TestParseMmCIFLigands.testMultipleConformations:109 expected:<114> but was:<0>

Any ideas?

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josemduarte commented Jul 6, 2017

Still working on it... Locally it worked ok for me but not in travis, weird.

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lafita commented Jul 6, 2017 •
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The master branch also fails on travis but passes for me locally. I can't tell from the travis log what is going wrong, though.

If it works locally for you we can assume it is alright.

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josemduarte commented Jul 6, 2017

Ok it's due to the use of https instead of http. Travis has some different settings for that (or perhaps a different java vm?) and it fails. I'll change to http.

@josemduarte josemduarte merged commit 9291fab into biojava:bugfixes-4.2 Jul 6, 2017
@sbliven sbliven mentioned this pull request Sep 2, 2017
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