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Commits on Apr 26, 2017

• Changing all line ending to unix (to match .gitattributes)

  sbliven

  committed
  21ea32a

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Commits on Apr 11, 2017

• Merge branch 'master' of https://github.com/valasatava/biojava

  valasatava

  committed
  4e20a41

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Commits on Apr 7, 2017

• Work with assemble hg19 or hg37 keyword

  valasatava

  committed
  31333af

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• Get CDS ranges patch

  valasatava

  committed
  b925bf9

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Commits on Apr 5, 2017

• Get CDS ranges patch

  valasatava

  committed
  ece5062

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Commits on Apr 4, 2017

• TwoBitFile geneAssembly fix

  valasatava

  committed
  2de5a12

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• A class to download .2bit file

  valasatava

  committed
  bce7fed

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• Refactoring FileDownload util to be a part of biojava-core project

  valasatava

  committed
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Commits on Apr 3, 2017

• proxy for convertDNAtoProteinSequence

  valasatava

  committed
  d26e861

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Commits on Mar 28, 2017

• .2bit parser facade added

  valasatava

  committed
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Commits on Mar 23, 2017

• Fix for orientation value: compare to Character, not to String

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  Yana Valasatava

  committed
  1f3a6dc

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Commits on Mar 21, 2017

• Changes required for Extracting protein sequence for genetic positions #642 pull request

  

  Yana Valasatava

  committed
  ef3b83a

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Commits on Mar 20, 2017

• Class to extract protein sequence from genetic positions

  

  Yana Valasatava

  committed
  4d00cd6

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Commits on Feb 24, 2017

• Chromosome mapping tool: unit test to check handling multiple UTRs preceding the coding region

  

  Yana Valasatava

  committed
  495e3f1

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• Unit tests for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
  5de7ea5

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• Chromosome mapping tool patch for converting a genomic position to the position on mRNA for the genes leaving on the forward strand

  

  Yana Valasatava

  committed
  9a999c5

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Commits on Feb 23, 2017

• Bugfix: chromosome mapping tool returns -1 if position falls outside coding region on the forward strand

  

  Yana Valasatava

  committed
  b42fd90

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Commits on Sep 21, 2016

• Merge branch 'master' of github.com:biojava/biojava

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  andreasprlic

  committed
  c34385a

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• tiny javadoc improvements

  andreasprlic

  committed
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Commits on Aug 28, 2016

• Merge pull request #567 from andviane/master

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  josemduarte

  authored
  75a5f59

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Commits on Aug 25, 2016

• More tests for issue #355

  andviane

  committed
  b3142b9

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• Pulling in the @josemduarte test case for issue #355

  andviane

  committed
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Commits on Aug 24, 2016

• Cleanup

  andviane

  committed
  220f9ff

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• Fix 355

  andviane

  committed
  b8f3a4c

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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
  56e81e6

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• setting default log level to warn

  andreasprlic

  committed
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Commits on Aug 10, 2016

• Merge branch 'bugfixes-4.2'

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  sbliven

  committed
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Commits on Jul 29, 2016

• new utility class for chromosome mappings.

  andreasprlic

  committed
  795be8f

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• new utility class for chromosome mappings.

  andreasprlic

  committed
  04b8f4a

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• new utility class for chromosome mappings.

  andreasprlic

  committed
  f2f4143

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• Adding test for genome mapping

  andreasprlic

  committed
  bceab29

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Commits on Jul 27, 2016

• #534 moving the getHTML methods out of BioJava

  andreasprlic

  committed
  269855a

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• #534 renaming method names, according to @joseduarte 's comments

  andreasprlic

  committed
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• #534 addressing @joseduarte 's comments

  andreasprlic

  committed
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Commits on Jul 26, 2016

• Merge branch 'master' of github.com:andreasprlic/biojava

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  andreasprlic

  committed
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